Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CESC rs7647118 chr3:161016165 T/C 4.82E-5 296 25.37 19.98 19.1 KM Plot
CESC rs76781087 chr4:110992033 T/C 2.49E-5 295 21.27 25.45 1.15 KM Plot
CESC rs76823503 chr17:76173779 C/T 7.49E-7 296 22.4 21.1 5.53 KM Plot
CESC rs77368109 chr11:33078230 A/G 9.01E-7 297 21.85 25.13 1.67 KM Plot
CESC rs77589896 chr3:149469608 T/G 8.2E-5 291 21.4 16.87 11.6 KM Plot
CESC rs7789882 chr7:45484246 C/T 8.37E-12 293 1.78 20.08 21.4 KM Plot
CESC rs78028836 chr12:12485448 G/A 0 296 22.83 20.67 0.47 KM Plot
CESC rs78053927 chr1:165105911 A/G 6.71E-5 289 21.5 21.3 9.17 KM Plot
CESC rs7807135 chr7:23604196 G/A 5.71E-5 296 21.4 21.17 17.43 KM Plot
CESC rs7807171 chr7:23604276 G/C 5.71E-5 296 21.4 21.17 17.43 KM Plot
CESC rs78197017 chr4:99019116 T/C 0 295 22.83 17.67 0.72 KM Plot
CESC rs78238878 chr10:9827125 A/C 6.11E-5 290 23.57 18.65 13.2 KM Plot
CESC rs7827733 chr8:109572347 C/T 3.44E-5 290 21.4 21.23 11.6 KM Plot
CESC rs7843758 chr8:22486403 C/T 9.2E-5 293 21.2 21.27 10.17 KM Plot
CESC rs78611326 chr19:11387806 G/A 6.18E-5 290 17.02 24.63 21.2 KM Plot